species:   Artha
pid:       MI0015956
parent:    ath-MIR854e
paralog:   
locus:     5:11942467-11942687
matures:   ['GAUGAGGAUAGGGAGGAGGAG', 'UCUCUUCUACCACAGCUAUUCCG']
srr:       SRR9216050
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram 5:11942467-11942687

4 out of bounds
7 alignments
5 proper strand
5 stranded perfect matches

***********************                                                                                                                                                                             *************************
CGGAUGAGGAUAGGGAGGAGGAGUAUGAUACGAGCAUGUAUCAUUUCAGUGAGCACGUACCUCCAGCGCGGGAGAGCAAGAGCUUGAGUGAAGCUCACAGAAACAACAGUAAGUUGCAGAGGUGGUGCAAGAAACAAGAUAGGUUACUUAUCAAGUGCUUCAAGGCCAUCACGUUUCUGACGGACAAGAUAAGUUGCUUCUCUUCUACCACAGCUAUUCCG
((((..((.....((((((((((((((((((......)))))).........((((.((((((....((......))..((((((.....)))))).......((((.....))))..)))))))))).................(((((((..((.(.(((((((......)))).))).).))..))))))))))))))))))).......))..))))
--GAUGAGGAUAGGGAGGAGGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ l=21 a=0 c
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUCUUCUACCACAGCUAUUCCG l=23 a=0 c*
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAAGUUGCUUCUCUUCUACCACA--------- l=23 a=2 ma
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUCUUCUACCACAGCUAUUCCG l=23 a=0 ma*

-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGCCAUCACGUUUCUGACGG-------------------------------------- l=22 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUCUGACGGACAAGAUAAGUUGC------------------------ l=24 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAAGUUGCUUCUCUUCUACCACA--------- l=23 a=2 (ma)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGCUUCUCUUCUACCACAGCUAUU--- l=24 a=1 

mb-00011
ax-1001011
ku-01
ss-111110101100
fn-001
